Preheat your oven to 325 degrees. (Skip this step if you are planning to make these cookies long fermented.)
In a large bowl, or a bowl of a stand mixer fitted with the paddle attachment, combine the butter and sugars. Beat these first 3 ingredients for 3-4 minutes on medium speed until well combined and fluffy.
Next, add your sourdough starter and mix for another 1-2 minutes until combined. Then add the peanut butter, mixing well. Then, add the eggs and vanilla and beat well for an additional 1-2 minutes.
After the wet ingredients are well combined, add the flour, baking soda, baking powder and sea salt to the bowl, mix in the dry ingredients until just combined.
After the flour is slightly incorporated. Add in both kinds of oats, and the inclusions (M&M’s and Chocolate Chips). Mix until the ingredients are just incorporated. If you are worried about overmixing, finish the last couple stirs with a rubber spatula to get it all well combined.
NOTE: at this point you can either let your cookie dough ferment or bake right away. If you plan to long ferment them: Place the cookie dough on the counter for 4 hours and then bake them or you can ferment on the counter for 4 hours and place in the fridge overnight.